Our group is using MOE (molecular operating environment) for computational studies. Members of focused libraries are identified using virtual screening as depicted right.
Virtual Screening and Docking
A second method of virtual screening is making use of pharmacophore model that describes important features of earlier identified modulators (depicted as ball and spheres).
Scaffold replacement is an important method to identify new structures that are likely to be as biologically active as the parent compound. Green arrows define transitions between scaffold and substituents.
Docking is used as a refined method to score previously identified molecules and to calculate preferred confirmation of small molecules to support Structure-Activity Relationship Studies.